The amount of publically available bioassay data has increased to the range of 200M endpoints.  At the same time, this data can be linked to a large amount of information in a variety of databases, such as NCBI Gene and PubChem Compound.  The breadth and depth of this data presents challenges for researchers attempting to extract useful data for their research.  The PubChem DataDicer centralizes this information in a single data warehouse allowing the researcher to rapidly locate assay endpoints with similar characteristics, such as shared pathways, targets and chemical properties, for further analysis.  We have also investigated the creation of a RESTful web API for programmatic access to this data warehouse.

PubChem DataDicer: A data warehouse for rapid querying of bioassay data

245th National Meeting (2013)

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