At CMDBioscience we faced gaps in external software for computer-aided peptide design, so we developed some unique software of our own. One such Python-based program, MarkInterstingAA solves multiple problems. It can be used to assess the peptide quality in two ways: by looking for bad contacts and bond angles and by evaluating the backbone Phi/Psi angles. In both cases the results are reported graphically. Good amino acids are shown in green, questionable in yellow and bad in red. MarkInterstingAA can also build cys-cys bridges in places where they are allowed by peptide geometry.

Python program for solving problems in computer-aided peptide design

253rd National Meeting (2017)

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